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PDBsum entry 2cn5

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Transferase PDB id
2cn5
Contents
Protein chain
283 a.a.
Ligands
NO3
ADP
Metals
_CL
_MG ×2
Waters ×154

References listed in PDB file
Key reference
Title Trans-Activation of the DNA-Damage signalling protein kinase chk2 by t-Loop exchange.
Authors A.W.Oliver, A.Paul, K.J.Boxall, S.E.Barrie, G.W.Aherne, M.D.Garrett, S.Mittnacht, L.H.Pearl.
Ref. EMBO J, 2006, 25, 3179-3190. [DOI no: 10.1038/sj.emboj.7601209]
PubMed id 16794575
Abstract
The protein kinase Chk2 (checkpoint kinase 2) is a major effector of the replication checkpoint. Chk2 activation is initiated by phosphorylation of Thr68, in the serine-glutamine/threonine-glutamine cluster domain (SCD), by ATM. The phosphorylated SCD-segment binds to the FHA domain of a second Chk2 molecule, promoting dimerisation of the protein and triggering phosphorylation of the activation segment/T-loop in the kinase domain. We have now determined the structure of the kinase domain of human Chk2 in complexes with ADP and a small-molecule inhibitor debromohymenialdisine. The structure reveals a remarkable dimeric arrangement in which T-loops are exchanged between protomers, to form an active kinase conformation in trans. Biochemical data suggest that this dimer is the biologically active state promoted by ATM-phosphorylation, and also suggests a mechanism for dimerisation-driven activation of Chk2 by trans-phosphorylation.
Figure 2.
Figure 2 Structure of Chk2 kinase domain. Secondary structure cartoon of the binary complex of CHK2-KD with ADP. The glycine-rich loop is coloured pink, the DFG and APE motifs red, and the T-loop yellow. Secondary structure elements corresponding to -strands are coloured blue and -helices cyan. ADP is shown as a 'stick' model. The catalytic residue Asp347, conserved residues Lys249 and Glu373, and autophosphorylation sites Thr383 and Thr387 are also highlighted. Molecular images in this and subsequent figures were generated using PyMOL (www.pymol.org).
Figure 7.
Figure 7 Chk2 T-loop autophosphorylation sites do not resemble endogenous substrates. Alignment of endogenous Chk2 substrate sequences (CDC25A, CDC25C, BRCA-1, E2F-1, PML) with an optimised substrate sequence (Chk2-TIDE) and T-loop autophosphorylation sites. For each sequence, the residue number of the first amino acid is listed (res). The autophosphorylation sites of Chk2 overlap, as indicated by the underlined regions. The 'p' column header indicates the phosphorylated amino acid.
The above figures are reprinted from an Open Access publication published by Macmillan Publishers Ltd: EMBO J (2006, 25, 3179-3190) copyright 2006.
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