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PDBsum entry 2c22

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2c22 calculated with MOLE 2.0 PDB id
2c22
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.71 1.92 27.6 1.83 0.75 8.3 91 2 0 1 5 0 0 0  DT 12 P DC 13 P DA 3 T DC 4 T 8OG 5 T DG 6 T DA 7
T
2 1.59 1.59 27.9 1.87 0.86 11.7 87 2 0 0 4 0 0 0  DC 2 T DA 3 T DC 4 T 8OG 5 T DG 6 T DA 7 T
3 1.67 1.68 31.3 -1.31 -0.08 27.7 94 4 0 2 2 0 0 0  DG 5 P DA 10 P DA 7 T DA 8 T DT 9 T DC 10 T
4 1.71 1.72 35.1 0.43 0.14 13.6 91 4 0 0 5 0 0 0  DC 4 T 8OG 5 T DG 6 T DA 7 T
5 1.64 1.63 35.3 0.56 0.33 11.4 91 3 1 1 3 0 0 0  CA 1345 A DT 12 P DC 13 P DC 4 T 8OG 5 T DG 6 T D
A 7 T
6 1.34 1.53 15.7 -1.64 -0.34 15.1 75 1 2 2 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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