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PDBsum entry 2bzd

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2bzd calculated with MOLE 2.0 PDB id
2bzd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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25 tunnels, coloured by tunnel radius 26 tunnels, coloured by tunnel radius 26 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.37 27.9 -1.18 -0.39 16.3 84 2 2 2 3 0 3 0  
2 1.36 30.2 -0.93 -0.42 13.5 87 2 2 2 3 0 2 0  
3 1.34 28.0 -1.15 -0.29 17.0 85 3 2 2 4 0 3 0  
4 1.33 30.1 -1.03 -0.35 14.2 84 4 2 2 4 1 1 0  
5 2.59 3.2 -1.82 -0.76 14.6 83 1 0 1 0 0 0 0  
6 1.40 9.6 -1.71 -0.09 20.8 90 2 0 2 1 1 0 0  
7 1.40 11.4 -1.98 -0.18 20.7 90 3 0 2 0 1 0 0  
8 1.40 12.0 -1.76 -0.13 21.0 89 2 0 3 0 1 0 0  
9 1.82 6.7 1.44 0.24 2.0 73 0 0 0 3 0 0 1  
10 1.38 10.2 -0.27 -0.70 3.3 93 0 0 1 1 0 0 0  
11 1.50 4.7 2.35 0.74 1.2 67 0 0 0 3 0 1 0  
12 1.35 7.0 2.99 0.96 0.7 73 0 0 1 4 1 0 1  
13 1.68 6.1 -0.73 -0.47 15.0 77 1 2 0 1 1 0 0  
14 1.65 6.4 -0.83 -0.48 14.1 77 1 1 0 1 1 0 0  
15 1.59 12.9 -2.07 -0.65 18.2 74 1 2 1 0 1 0 0  
16 1.56 5.1 -3.14 -0.68 22.2 76 1 0 2 1 0 0 0  
17 1.45 12.1 -1.55 -0.55 16.5 76 2 0 1 0 2 0 0  
18 1.39 9.1 -2.24 -0.01 28.0 81 3 0 1 0 1 0 0  
19 1.37 11.6 0.32 -0.22 4.9 88 1 0 1 4 0 0 0  
20 1.47 13.1 0.18 -0.29 6.2 87 1 1 1 4 0 0 0  
21 1.85 5.7 -1.17 -0.29 2.9 72 0 0 2 2 1 0 0  
22 2.19 5.7 -2.32 -0.77 28.1 92 1 1 1 0 0 0 0  
23 2.12 6.0 -0.58 -0.50 8.0 70 1 2 0 1 0 1 0  
24 1.48 6.3 -0.72 -0.52 12.0 72 1 0 0 2 0 0 0  
25 1.57 2.1 -1.77 -0.71 17.3 102 2 0 1 0 0 0 0  
26 1.46 5.9 -0.46 -0.62 7.6 72 1 0 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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