PDBsum entry 2bpf Go to PDB code:  Tunnel analysis for: 2bpf calculated with MOLE 2.0 PDB id 2bpf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 25.8 -1.63 -0.42 26.0 78 4 4 1 1 2 0 0  DCT 338 A MG 340 A DC 7 P 2 1.15 1.32 27.0 -1.53 -0.38 25.5 79 4 5 1 2 2 0 0  DCT 338 A MG 340 A DC 7 P 3 1.16 1.31 27.9 -1.12 -0.11 24.0 72 2 4 0 1 2 0 0  DCT 338 A MG 340 A DC 6 P DC 7 P 4 1.18 1.18 29.1 -1.04 -0.04 23.5 75 2 5 0 2 2 0 0  DCT 338 A MG 340 A DC 6 P DC 7 P 5 1.18 1.95 18.2 3.81 1.33 0.3 91 0 0 0 9 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.