PDBsum entry 2bkt

Tunnel analysis for: 2bkt calculated with

MOLE 2.0

PDB id

2bkt

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

1 tunnel, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.42

1.57

28.5

0.31

0.25

5.5

78

2

1

2

5

3

2

0

RPF 567 A

2

1.42

1.58

29.4

0.58

0.34

5.4

76

2

1

2

5

3

2

0

RPF 567 A

3

1.41

1.56

31.8

0.20

0.16

7.7

78

2

1

2

4

4

2

0

RPF 567 A

4

1.41

1.56

34.1

0.18

0.26

7.4

80

2

1

2

4

4

2

0

RPF 567 A

5

1.75

2.07

25.7

0.18

0.15

4.0

78

1

1

2

4

3

2

0

RPF 567 B

6

1.73

2.05

27.8

0.44

0.39

7.4

74

2

1

1

5

5

2

0

RPF 567 B

7

1.73

2.05

29.2

0.41

0.33

5.2

75

2

1

1

5

4

3

0

RPF 567 B

8

1.06

1.38

15.7

-0.93

0.01

18.3

71

2

1

0

1

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.