PDBsum entry 2bkk

Pore analysis for: 2bkk calculated with

MOLE 2.0

PDB id

2bkk

Pores calculated on whole structure

Pores calculated excluding ligands

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6 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

3.00

36.9

-0.21

0.05

15.3

76

2

2

2

7

3

0

0

2

1.73

1.80

47.4

-1.79

-0.36

23.0

80

4

6

4

2

5

0

0

3

1.82

2.78

58.6

-2.05

-0.48

26.7

90

6

8

5

4

1

0

0

ADP 1265 C MG 1266 C MG 1267 C

4

1.88

2.88

59.7

-1.96

-0.67

25.5

83

3

8

3

2

2

1

0

ADP 1265 C MG 1266 C

5

1.79

3.59

64.9

-2.42

-0.60

28.4

79

5

9

2

1

3

1

0

6

1.75

2.88

69.2

-1.74

-0.61

29.8

84

3

12

2

5

0

0

0

ADP 1265 C MG 1266 C

7

1.91

3.62

73.3

-2.21

-0.65

31.2

84

8

10

2

4

1

0

0

8

2.97

3.11

73.9

-2.08

-0.67

27.6

78

6

9

2

2

2

1

0

9

1.30

2.71

93.8

-0.93

-0.30

19.9

82

1

14

6

11

2

0

0

ADP 1265 C MG 1266 C

10

1.23

2.52

97.9

-1.46

-0.41

23.1

82

6

12

6

9

3

0

0

11

1.21

2.53

98.5

-1.30

-0.40

20.2

78

4

11

6

7

4

1

0

12

1.74

1.81

112.8

-1.66

-0.44

25.2

83

6

15

6

8

6

0

0

ADP 1265 A MG 1266 A ADP 1265 C MG 1266 C

13

1.74

1.69

138.2

-1.95

-0.52

26.4

82

10

17

7

7

7

0

0

ADP 1265 A MG 1266 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.