spacer
spacer

PDBsum entry 2be5

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2be5 calculated with MOLE 2.0 PDB id
2be5
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
60 pores, coloured by radius 60 pores, coloured by radius 60 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.89 4.51 30.9 -2.95 -0.67 33.1 74 2 3 2 0 3 1 0  
2 1.41 1.42 40.6 -0.40 -0.43 10.3 87 6 2 2 10 0 6 0  
3 1.38 1.43 41.7 -2.24 -0.67 23.7 78 2 4 4 3 2 1 1  
4 3.53 3.92 53.7 -2.52 -0.44 28.3 74 5 7 2 2 3 4 0  
5 1.28 1.54 71.0 -0.49 -0.13 16.6 78 5 3 2 7 1 0 0  
6 1.24 1.25 80.3 -1.15 -0.28 22.3 80 6 7 0 7 3 2 0  
7 1.29 1.58 112.1 -2.15 -0.48 30.4 82 17 16 3 6 3 3 0  
8 2.19 2.36 123.2 -1.41 -0.43 20.6 82 9 6 5 9 5 3 0  
9 1.24 1.26 137.7 -1.85 -0.44 26.5 81 11 11 5 8 4 0 0  
10 1.31 1.29 151.6 -0.27 -0.13 15.8 78 11 13 4 23 6 3 0  
11 1.28 1.52 152.6 -1.68 -0.46 23.9 80 19 15 6 10 7 6 0  
12 1.29 1.23 155.6 -1.07 -0.29 23.5 80 21 15 6 17 0 2 0  
13 1.16 1.47 156.8 -2.03 -0.44 23.6 84 19 12 10 9 3 3 0  TGT 9001 D
14 1.10 1.26 167.4 -0.31 -0.06 17.6 78 15 13 3 24 5 2 0  
15 1.29 1.22 171.4 -0.36 -0.07 17.3 78 15 12 5 18 4 2 0  
16 1.46 1.54 172.4 -1.79 -0.43 25.1 79 23 14 6 5 5 5 0  
17 1.14 1.41 175.2 -1.52 -0.38 24.3 79 22 15 4 12 6 5 0  
18 1.93 2.93 186.5 -1.73 -0.40 25.5 79 24 21 5 16 9 7 0  
19 1.32 1.37 184.3 -1.51 -0.37 22.0 81 21 12 7 17 6 4 0  
20 1.26 1.26 190.3 -2.08 -0.52 27.4 82 17 19 9 7 4 1 0  
21 1.32 1.28 195.1 -1.09 -0.25 20.9 78 19 15 7 21 4 3 0  
22 1.11 1.24 193.8 -1.46 -0.30 23.6 82 20 11 6 18 4 2 0  
23 1.33 1.45 201.1 -2.20 -0.53 27.4 80 28 18 9 8 3 5 0  
24 1.18 1.23 198.4 -1.04 -0.16 22.2 83 18 12 3 22 4 5 0  
25 2.08 3.34 206.3 -1.80 -0.35 26.7 80 28 20 6 11 7 6 0  
26 1.17 1.37 209.1 -1.62 -0.33 26.1 80 27 21 4 18 8 6 0  
27 1.26 1.31 206.5 -1.68 -0.49 21.3 82 17 16 11 15 7 4 0  TGT 9001 D
28 1.40 1.62 234.9 -2.13 -0.44 28.2 79 33 24 8 14 6 6 0  
29 1.24 1.74 255.6 -1.04 -0.25 19.9 80 20 22 10 25 7 3 0  TGT 9001 D
30 1.22 1.20 289.5 -1.85 -0.42 24.1 82 30 21 14 19 7 4 0  TGT 9001 D
31 1.36 3.73 25.4 -1.33 -0.04 23.3 68 3 3 0 2 4 1 0  
32 1.27 2.40 28.2 -1.62 -0.27 27.2 78 7 4 1 5 1 0 1  
33 1.58 3.85 52.6 -1.64 -0.35 21.2 80 7 5 1 4 3 0 0  
34 1.21 1.39 57.4 -1.09 -0.10 22.4 76 8 5 2 5 5 1 0  
35 1.46 1.67 67.4 -2.14 -0.62 28.9 82 9 9 6 5 1 0 0  
36 1.47 1.53 77.5 -2.09 -0.77 27.1 81 5 11 4 3 2 3 0  
37 1.62 1.74 91.9 -1.76 -0.38 22.8 81 14 7 4 4 5 1 0  
38 2.04 2.58 96.9 -1.87 -0.33 23.1 78 9 8 5 4 5 1 0  
39 1.23 1.22 106.5 -0.87 -0.22 21.3 82 10 7 1 12 3 1 0  
40 2.15 2.56 110.2 -1.22 -0.26 18.9 78 8 7 2 7 3 7 0  
41 1.48 1.78 113.0 -1.79 -0.47 27.1 82 15 15 5 9 4 0 0  
42 2.57 4.87 114.9 -1.90 -0.54 22.2 80 6 15 7 3 5 7 0  
43 2.06 2.46 119.9 -2.18 -0.45 26.2 77 12 14 7 9 5 2 0  
44 1.94 2.03 118.8 -1.93 -0.52 24.9 81 13 12 9 8 2 2 0  
45 1.47 1.53 120.0 -2.02 -0.51 22.9 80 9 12 6 4 5 6 0  
46 1.81 1.87 123.2 -1.28 -0.40 15.9 85 8 9 8 10 4 1 0  
47 2.16 2.17 149.6 -2.22 -0.63 25.4 79 12 21 11 11 3 6 0  
48 1.46 1.57 161.8 -2.22 -0.57 25.0 79 15 17 10 12 3 5 0  
49 1.91 2.51 172.6 -1.86 -0.44 21.9 79 10 19 12 7 7 9 0  
50 1.33 1.61 181.4 -2.06 -0.60 27.3 81 19 22 8 10 3 4 0  
51 1.89 2.47 187.9 -1.43 -0.22 22.0 76 14 19 5 13 9 10 0  
52 1.96 2.09 200.6 -2.03 -0.53 24.2 82 17 25 14 14 5 7 0  
53 2.02 2.03 204.5 -1.59 -0.38 23.0 79 19 22 10 15 6 10 0  
54 2.12 2.39 238.5 -1.59 -0.43 20.8 81 16 24 15 13 7 15 0  
55 1.73 4.82 244.8 -2.07 -0.31 29.4 79 25 17 3 15 4 5 0  
56 1.57 1.70 258.5 -2.45 -0.44 30.4 78 27 19 6 11 4 7 0  
57 1.82 4.81 263.7 -2.04 -0.39 27.7 79 23 23 7 15 4 8 0  
58 1.59 4.61 285.0 -2.38 -0.31 30.6 77 29 21 4 11 7 6 0  
59 2.03 2.59 310.1 -2.36 -0.40 30.5 78 34 26 8 15 5 7 0  
60 1.79 5.42 362.2 -1.92 -0.28 27.3 78 36 29 6 19 10 13 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer