 |
PDBsum entry 2bcs
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2bcs calculated with MOLE 2.0
|
PDB id
|
|
|
|
2bcs
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
3 pores,
coloured by radius |
 |
3 pores,
coloured by radius
|
3 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.38 |
1.54 |
30.5 |
-1.63 |
-0.46 |
16.6 |
78 |
 |
3 |
2 |
2 |
1 |
1 |
1 |
0 |
 |
DC 3 D DG 4 D DG 3 T DC 4 T
|
 |
 |
2 |
 |
2.94 |
2.96 |
48.8 |
-1.98 |
-0.41 |
26.3 |
74 |
8 |
2 |
1 |
1 |
2 |
0 |
1 |
PPV 901 A DC 1 P DA 2 P DG 3 P DT 4 P DA 5 P DC 6 P DG 7 P DT 8 T
|
 |
3 |
 |
1.20 |
1.20 |
65.5 |
-1.14 |
-0.22 |
18.4 |
81 |
2 |
2 |
4 |
6 |
1 |
3 |
0 |
DG 3 P DT 4 P DA 5 P DC 6 P DC 7 T DT 8 T DA 9 T DC 10 T DT 11 T DG 12 T
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |