PDBsum entry 2bcj Go to PDB code:  Tunnel analysis for: 2bcj calculated with MOLE 2.0 PDB id 2bcj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.20 21.9 0.73 0.35 9.5 83 2 0 2 4 1 1 0   2 1.18 1.35 24.7 0.10 -0.20 9.9 85 1 2 2 8 0 0 0   3 1.19 1.35 30.5 0.67 0.00 8.8 78 2 2 1 8 1 0 0   4 1.25 1.26 29.2 2.06 0.46 1.9 74 0 1 0 9 3 0 0   5 1.50 1.80 15.6 -0.62 -0.35 11.3 80 0 1 1 3 1 1 0   6 1.18 1.31 24.0 0.21 -0.25 4.7 77 1 0 2 5 2 1 0   7 1.44 1.67 19.4 -1.10 0.03 7.2 82 0 1 5 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.