Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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A.S.Walker,
C.Auclair,
M.Gredt,
and
P.Leroux
(2009).
First occurrence of resistance to strobilurin fungicides in Microdochium nivale and Microdochium majus from French naturally infected wheat grains.
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Pest Manag Sci, 65,
906-915.
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M.Sarewicz,
M.Dutka,
W.Froncisz,
and
A.Osyczka
(2009).
Magnetic interactions sense changes in distance between heme b(L) and the iron-sulfur cluster in cytochrome bc(1).
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Biochemistry, 48,
5708-5720.
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P.Van Nieuwenhuyse,
T.Van Leeuwen,
J.Khajehali,
B.Vanholme,
and
L.Tirry
(2009).
Mutations in the mitochondrial cytochrome b of Tetranychus urticae Koch (Acari: Tetranychidae) confer cross-resistance between bifenazate and acequinocyl.
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Pest Manag Sci, 65,
404-412.
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Q.L.Chen,
X.S.Tang,
W.J.Yao,
and
S.Q.Lu
(2009).
Bioinformatics analysis of the complete sequences of cytochrome b of Takydromus sylvaticus and modeling the tertiary structure of encoded protein.
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Int J Biol Sci, 5,
596-602.
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R.Covian,
and
B.L.Trumpower
(2009).
Ilicicolin Inhibition and Binding at Center N of the Dimeric Cytochrome bc1 Complex Reveal Electron Transfer and Regulatory Interactions between Monomers.
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J Biol Chem, 284,
8614-8620.
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S.Lemeille,
A.Willig,
N.Depège-Fargeix,
C.Delessert,
R.Bassi,
and
J.D.Rochaix
(2009).
Analysis of the chloroplast protein kinase Stt7 during state transitions.
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PLoS Biol, 7,
e45.
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V.Zara,
L.Conte,
and
B.L.Trumpower
(2009).
Evidence that the assembly of the yeast cytochrome bc1 complex involves the formation of a large core structure in the inner mitochondrial membrane.
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FEBS J, 276,
1900-1914.
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A.P.Komarov,
O.W.Rokhlin,
C.A.Yu,
and
A.V.Gudkov
(2008).
Functional genetic screening reveals the role of mitochondrial cytochrome b as a mediator of FAS-induced apoptosis.
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Proc Natl Acad Sci U S A, 105,
14453-14458.
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B.Gurung,
L.Yu,
and
C.A.Yu
(2008).
Stigmatellin Induces Reduction of Iron-Sulfur Protein in the Oxidized Cytochrome bc1 Complex.
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J Biol Chem, 283,
28087-28094.
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D.Fernández-Ortuño,
J.A.Torés,
A.de Vicente,
and
A.Pérez-García
(2008).
Field resistance to QoI fungicides in Podosphaera fusca is not supported by typical mutations in the mitochondrial cytochrome b gene.
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Pest Manag Sci, 64,
694-702.
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D.Xia,
L.Esser,
M.Elberry,
F.Zhou,
L.Yu,
and
C.A.Yu
(2008).
The road to the crystal structure of the cytochrome bc (1) complex from the anoxigenic, photosynthetic bacterium Rhodobacter sphaeroides.
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J Bioenerg Biomembr, 40,
485-492.
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E.A.Berry,
and
F.A.Walker
(2008).
Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins.
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J Biol Inorg Chem, 13,
481-498.
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G.J.Workun,
K.Moquin,
R.A.Rothery,
and
J.H.Weiner
(2008).
Evolutionary persistence of the molybdopyranopterin-containing sulfite oxidase protein fold.
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Microbiol Mol Biol Rev, 72,
228.
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L.Esser,
M.Elberry,
F.Zhou,
C.A.Yu,
L.Yu,
and
D.Xia
(2008).
Inhibitor-complexed Structures of the Cytochrome bc1 from the Photosynthetic Bacterium Rhodobacter sphaeroides.
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J Biol Chem, 283,
2846-2857.
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PDB codes:
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N.Fisher,
and
B.Meunier
(2008).
Molecular basis of resistance to cytochrome bc1 inhibitors.
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FEMS Yeast Res, 8,
183-192.
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O.A.Ulanovskaya,
J.Janjic,
M.Suzuki,
S.S.Sabharwal,
P.T.Schumacker,
S.J.Kron,
and
S.A.Kozmin
(2008).
Synthesis enables identification of the cellular target of leucascandrolide A and neopeltolide.
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Nat Chem Biol, 4,
418-424.
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S.R.Solmaz,
and
C.Hunte
(2008).
Structure of complex III with bound cytochrome c in reduced state and definition of a minimal core interface for electron transfer.
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J Biol Chem, 283,
17542-17549.
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PDB codes:
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S.Yang,
H.W.Ma,
L.Yu,
and
C.A.Yu
(2008).
On the Mechanism of Quinol Oxidation at the QP Site in the Cytochrome bc1 Complex: STUDIED USING MUTANTS LACKING CYTOCHROME bL OR bH.
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J Biol Chem, 283,
28767-28776.
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T.Kleinschroth,
O.Anderka,
M.Ritter,
A.Stocker,
T.A.Link,
B.Ludwig,
and
P.Hellwig
(2008).
Characterization of mutations in crucial residues around the Q(o) binding site of the cytochrome bc complex from Paracoccus denitrificans.
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FEBS J, 275,
4773-4785.
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A.Bresell,
and
B.Persson
(2007).
Characterization of oligopeptide patterns in large protein sets.
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BMC Genomics, 8,
346.
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A.Y.Mulkidjanian
(2007).
Proton translocation by the cytochrome bc1 complexes of phototrophic bacteria: introducing the activated Q-cycle.
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Photochem Photobiol Sci, 6,
19-34.
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D.Xia,
L.Esser,
L.Yu,
and
C.A.Yu
(2007).
Structural basis for the mechanism of electron bifurcation at the quinol oxidation site of the cytochrome bc1 complex.
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Photosynth Res, 92,
17-34.
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J.Heinemeyer,
H.P.Braun,
E.J.Boekema,
and
R.Kouril
(2007).
A structural model of the cytochrome C reductase/oxidase supercomplex from yeast mitochondria.
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J Biol Chem, 282,
12240-12248.
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J.Zhu,
T.Egawa,
S.R.Yeh,
L.Yu,
and
C.A.Yu
(2007).
Simultaneous reduction of iron-sulfur protein and cytochrome b(L) during ubiquinol oxidation in cytochrome bc(1) complex.
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Proc Natl Acad Sci U S A, 104,
4864-4869.
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L.Giachini,
F.Francia,
G.Veronesi,
D.W.Lee,
F.Daldal,
L.S.Huang,
E.A.Berry,
T.Cocco,
S.Papa,
F.Boscherini,
and
G.Venturoli
(2007).
X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes.
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Biophys J, 93,
2934-2951.
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M.S.Chae,
C.C.Lin,
K.E.Kessler,
C.E.Nargang,
L.L.Tanton,
L.B.Hahn,
and
F.E.Nargang
(2007).
Identification of an alternative oxidase induction motif in the promoter region of the aod-1 gene in Neurospora crassa.
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Genetics, 175,
1597-1606.
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R.Covian,
K.Zwicker,
F.A.Rotsaert,
and
B.L.Trumpower
(2007).
Asymmetric and redox-specific binding of quinone and quinol at center N of the dimeric yeast cytochrome bc1 complex. Consequences for semiquinone stabilization.
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J Biol Chem, 282,
24198-24208.
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R.Covian,
T.Kleinschroth,
B.Ludwig,
and
B.L.Trumpower
(2007).
Asymmetric binding of stigmatellin to the dimeric Paracoccus denitrificans bc1 complex: evidence for anti-cooperative ubiquinol oxidation and communication between center P ubiquinol oxidation sites.
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J Biol Chem, 282,
22289-22297.
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R.Kuras,
D.Saint-Marcoux,
F.A.Wollman,
and
C.de Vitry
(2007).
A specific c-type cytochrome maturation system is required for oxygenic photosynthesis.
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Proc Natl Acad Sci U S A, 104,
9906-9910.
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S.A.Dikanov,
J.T.Holland,
B.Endeward,
D.R.Kolling,
R.I.Samoilova,
T.F.Prisner,
and
A.R.Crofts
(2007).
Hydrogen bonds between nitrogen donors and the semiquinone in the Qi-site of the bc1 complex.
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J Biol Chem, 282,
25831-25841.
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V.Zara,
L.Conte,
and
B.L.Trumpower
(2007).
Identification and characterization of cytochrome bc(1) subcomplexes in mitochondria from yeast with single and double deletions of genes encoding cytochrome bc(1) subunits.
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FEBS J, 274,
4526-4539.
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Y.R.Chen,
C.L.Chen,
D.R.Pfeiffer,
and
J.L.Zweier
(2007).
Mitochondrial complex II in the post-ischemic heart: oxidative injury and the role of protein S-glutathionylation.
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J Biol Chem, 282,
32640-32654.
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C.S.Willett
(2006).
Deleterious epistatic interactions between electron transport system protein-coding loci in the copepod Tigriopus californicus.
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Genetics, 173,
1465-1477.
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E.J.Haddadian,
and
E.L.Gross
(2006).
A Brownian dynamics study of the interactions of the luminal domains of the cytochrome b6f complex with plastocyanin and cytochrome c6: the effects of the Rieske FeS protein on the interactions.
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Biophys J, 91,
2589-2600.
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E.Schäfer,
H.Seelert,
N.H.Reifschneider,
F.Krause,
N.A.Dencher,
and
J.Vonck
(2006).
Architecture of active mammalian respiratory chain supercomplexes.
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J Biol Chem, 281,
15370-15375.
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F.A.Walker
(2006).
The heme environment of mouse neuroglobin: histidine imidazole plane orientations obtained from solution NMR and EPR spectroscopy as compared with X-ray crystallography.
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J Biol Inorg Chem, 11,
391-397.
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I.Forquer,
R.Covian,
M.K.Bowman,
B.L.Trumpower,
and
D.M.Kramer
(2006).
Similar transition states mediate the Q-cycle and superoxide production by the cytochrome bc1 complex.
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J Biol Chem, 281,
38459-38465.
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J.Bachmann,
B.Bauer,
K.Zwicker,
B.Ludwig,
and
O.Anderka
(2006).
The Rieske protein from Paracoccus denitrificans is inserted into the cytoplasmic membrane by the twin-arginine translocase.
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FEBS J, 273,
4817-4830.
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J.Yan,
G.Kurisu,
and
W.A.Cramer
(2006).
Intraprotein transfer of the quinone analogue inhibitor 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone in the cytochrome b6f complex.
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Proc Natl Acad Sci U S A, 103,
69-74.
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J.Zhang,
F.E.Frerman,
and
J.J.Kim
(2006).
Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool.
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Proc Natl Acad Sci U S A, 103,
16212-16217.
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PDB codes:
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L.Esser,
X.Gong,
S.Yang,
L.Yu,
C.A.Yu,
and
D.Xia
(2006).
Surface-modulated motion switch: capture and release of iron-sulfur protein in the cytochrome bc1 complex.
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Proc Natl Acad Sci U S A, 103,
13045-13050.
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PDB codes:
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R.Covian,
and
B.L.Trumpower
(2006).
Regulatory interactions between ubiquinol oxidation and ubiquinone reduction sites in the dimeric cytochrome bc1 complex.
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J Biol Chem, 281,
30925-30932.
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S.Balakumar,
P.Thanasekaran,
E.Rajkumar,
K.J.Adaikalasamy,
S.Rajagopal,
R.Ramaraj,
T.Rajendran,
B.Manimaran,
and
K.L.Lu
(2006).
Micellar catalysis on the electron transfer reactions of iron(III)-polypyridyl complexes with organic sulfides-importance of hydrophobic interactions.
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Org Biomol Chem, 4,
352-358.
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W.A.Cramer,
H.Zhang,
J.Yan,
G.Kurisu,
and
J.L.Smith
(2006).
Transmembrane traffic in the cytochrome b6f complex.
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Annu Rev Biochem, 75,
769-790.
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A.J.Watson,
A.V.Hughes,
P.K.Fyfe,
M.C.Wakeham,
K.Holden-Dye,
P.Heathcote,
and
M.R.Jones
(2005).
On the role of basic residues in adapting the reaction centre-LH1 complex for growth at elevated temperatures in purple bacteria.
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Photosynth Res, 86,
81.
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A.Y.Andreyev,
Y.E.Kushnareva,
and
A.A.Starkov
(2005).
Mitochondrial metabolism of reactive oxygen species.
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Biochemistry (Mosc), 70,
200-214.
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B.Gurung,
L.Yu,
D.Xia,
and
C.A.Yu
(2005).
The iron-sulfur cluster of the Rieske iron-sulfur protein functions as a proton-exiting gate in the cytochrome bc(1) complex.
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J Biol Chem, 280,
24895-24902.
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F.Musiani,
A.Dikiy,
A.Y.Semenov,
and
S.Ciurli
(2005).
Structure of the intermolecular complex between plastocyanin and cytochrome f from spinach.
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J Biol Chem, 280,
18833-18841.
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PDB code:
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J.N.Forkey,
M.E.Quinlan,
and
Y.E.Goldman
(2005).
Measurement of single macromolecule orientation by total internal reflection fluorescence polarization microscopy.
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Biophys J, 89,
1261-1271.
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M.E.Nelson,
G.Finazzi,
Q.J.Wang,
K.A.Middleton-Zarka,
J.Whitmarsh,
and
T.Kallas
(2005).
Cytochrome b6 arginine 214 of Synechococcus sp. PCC 7002, a key residue for quinone-reductase site function and turnover of the cytochrome bf complex.
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J Biol Chem, 280,
10395-10402.
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M.W.Mather,
E.Darrouzet,
M.Valkova-Valchanova,
J.W.Cooley,
M.T.McIntosh,
F.Daldal,
and
A.B.Vaidya
(2005).
Uncovering the molecular mode of action of the antimalarial drug atovaquone using a bacterial system.
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J Biol Chem, 280,
27458-27465.
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N.Dashdorj,
H.Zhang,
H.Kim,
J.Yan,
W.A.Cramer,
and
S.Savikhin
(2005).
The single chlorophyll a molecule in the cytochrome b6f complex: unusual optical properties protect the complex against singlet oxygen.
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Biophys J, 88,
4178-4187.
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O.Zafra,
F.Cava,
F.Blasco,
A.Magalon,
and
J.Berenguer
(2005).
Membrane-associated maturation of the heterotetrameric nitrate reductase of Thermus thermophilus.
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J Bacteriol, 187,
3990-3996.
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R.Covian,
and
B.L.Trumpower
(2005).
Rapid electron transfer between monomers when the cytochrome bc1 complex dimer is reduced through center N.
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J Biol Chem, 280,
22732-22740.
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S.Ouchane,
W.Nitschke,
P.Bianco,
A.Vermeglio,
and
C.Astier
(2005).
Multiple Rieske genes in prokaryotes: exchangeable Rieske subunits in the cytochrome bc-complex of Rubrivivax gelatinosus.
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Mol Microbiol, 57,
261-275.
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X.Gong,
L.Yu,
D.Xia,
and
C.A.Yu
(2005).
Evidence for electron equilibrium between the two hemes bL in the dimeric cytochrome bc1 complex.
|
| |
J Biol Chem, 280,
9251-9257.
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A.Kounosu,
Z.Li,
N.J.Cosper,
J.E.Shokes,
R.A.Scott,
T.Imai,
A.Urushiyama,
and
T.Iwasaki
(2004).
Engineering a three-cysteine, one-histidine ligand environment into a new hyperthermophilic archaeal Rieske-type [2Fe-2S] ferredoxin from Sulfolobus solfataricus.
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| |
J Biol Chem, 279,
12519-12528.
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A.Osyczka,
C.C.Moser,
F.Daldal,
and
P.L.Dutton
(2004).
Reversible redox energy coupling in electron transfer chains.
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| |
Nature, 427,
607-612.
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A.R.Crofts
(2004).
The cytochrome bc1 complex: function in the context of structure.
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Annu Rev Physiol, 66,
689-733.
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A.Stroh,
O.Anderka,
K.Pfeiffer,
T.Yagi,
M.Finel,
B.Ludwig,
and
H.Schägger
(2004).
Assembly of respiratory complexes I, III, and IV into NADH oxidase supercomplex stabilizes complex I in Paracoccus denitrificans.
|
| |
J Biol Chem, 279,
5000-5007.
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C.de Vitry,
Y.Ouyang,
G.Finazzi,
F.A.Wollman,
and
T.Kallas
(2004).
The chloroplast Rieske iron-sulfur protein. At the crossroad of electron transport and signal transduction.
|
| |
J Biol Chem, 279,
44621-44627.
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D.Ghibaudo,
L.Cohen,
F.Penin,
and
A.Martin
(2004).
Characterization of GB virus B polyprotein processing reveals the existence of a novel 13-kDa protein with partial homology to hepatitis C virus p7 protein.
|
| |
J Biol Chem, 279,
24965-24975.
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D.Moradpour,
V.Brass,
E.Bieck,
P.Friebe,
R.Gosert,
H.E.Blum,
R.Bartenschlager,
F.Penin,
and
V.Lohmann
(2004).
Membrane association of the RNA-dependent RNA polymerase is essential for hepatitis C virus RNA replication.
|
| |
J Virol, 78,
13278-13284.
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D.Schneider,
S.Berry,
T.Volkmer,
A.Seidler,
and
M.Rögner
(2004).
PetC1 is the major Rieske iron-sulfur protein in the cytochrome b6f complex of Synechocystis sp. PCC 6803.
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| |
J Biol Chem, 279,
39383-39388.
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E.B.Gutierrez-Cirlos,
T.Merbitz-Zahradnik,
and
B.L.Trumpower
(2004).
Inhibition of the yeast cytochrome bc1 complex by ilicicolin H, a novel inhibitor that acts at the Qn site of the bc1 complex.
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| |
J Biol Chem, 279,
8708-8714.
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E.D.Garcin,
C.M.Bruns,
S.J.Lloyd,
D.J.Hosfield,
M.Tiso,
R.Gachhui,
D.J.Stuehr,
J.A.Tainer,
and
E.D.Getzoff
(2004).
Structural basis for isozyme-specific regulation of electron transfer in nitric-oxide synthase.
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| |
J Biol Chem, 279,
37918-37927.
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PDB code:
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F.Baymann,
E.Lebrun,
and
W.Nitschke
(2004).
Mitochondrial cytochrome c1 is a collapsed di-heme cytochrome.
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| |
Proc Natl Acad Sci U S A, 101,
17737-17740.
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F.L.Muller,
Y.Liu,
and
H.Van Remmen
(2004).
Complex III releases superoxide to both sides of the inner mitochondrial membrane.
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| |
J Biol Chem, 279,
49064-49073.
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G.Brasseur,
D.Lemesle-Meunier,
F.Reinaud,
and
B.Meunier
(2004).
QO site deficiency can be compensated by extragenic mutations in the hinge region of the iron-sulfur protein in the bc1 complex of Saccharomyces cerevisiae.
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J Biol Chem, 279,
24203-24211.
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442 a.a.
406 a.a.
379 a.a.
241 a.a.
196 a.a.
100 a.a.
78 a.a.
66 a.a.
33 a.a.
59 a.a.
. c, d, Schematic drawing representing the cofactors. a, c, Results from a native crystal, with the iron-sulphur cluster of the Rieske protein in the distal position (from the low-potential haem group of cytochrome b). b, d, Results from a crystal containing bound stigmatellin, with the cluster in the proximal position.
