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Ligand clusters for UniProt code P06820

Ligand clusters for P06820: Neuraminidase OS=Influenza A virus (strain A/Tokyo/3/1967 H2N2) GN=NA PE=1 SV=2

5 ligand clusters
Cluster 1.
4 ligand types
9 ligands
Cluster 2.
3 ligand types
9 ligands
Cluster 3.
7 ligand types
7 ligands
Cluster 4.
2 ligand types
18 ligands
Cluster 5.
1 ligand type
9 ligands
Representative protein: 1inhA  
 

Structures

PDB   Schematic diagram
1inhA    
1nn2A    
2batA    
1ivfA    
1inxA    
 more ...

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 6
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 1ivc(A), 1ivd(A), 1ivf(A), 1ivg(A), 1nn2(A), 2bat(A).


 
2. Ligand: NAG-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 1inh(A).


 
3. Ligand: NAG-NAG-BMA-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB code: 1inx(A).


 
4. Ligand: NAG-NAG-MAN-MAN-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 1inw(A).

 

 Cluster 2 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 2
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1inw(A), 1inx(A).


 
2. Ligand: NAG-NAG-BMA-FUL × 5
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, FUL=Beta-L-Fucose.
PDB codes: 1inh(A), 1ivc(A), 1ivd(A), 1ivf(A), 1ivg(A).


 
3. Ligand: NAG-NAG-BMA-MAN-NAG-NGK-FUL × 2
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose, NGK=2-(Acetylamino)-2-Deoxy-4-O-Sulfo-Alpha-D- Galactopyranose, FUL=Beta-L-Fucose.
PDB codes: 1nn2(A), 2bat(A).

 

 Cluster 3 contains 7 ligand types

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Ligand Description


 
1. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1ivf(A).


 
2. Ligand: ST2 × 1
4-(Acetylamino)-5-Amino-3-Hydroxybenzoic acid
PDB code: 1ivc(A).


 
3. Ligand: ST1 × 1
4-(Acetylamino)-3-Hydroxy-5-Nitrobenzoic acid
PDB code: 1ivd(A).


 
4. Ligand: ST6 × 1
4-(Acetylamino)-3-[(Aminoacetyl)amino]benzoic acid
PDB code: 1inh(A).


 
5. Ligand: AXP × 1
4-Acetamido-2,4-Didexoy-D-Glycero-Beta-D-Galacto-
Octopyranosylphosphonic acid (an axial phosphonate)
PDB code: 1inw(A).


 
6. Ligand: EQP × 1
(4-Acetamido-2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1- Octopyranosyl)phosphonic acid
PDB code: 1inx(A).


 
7. Ligand: SIA × 1
O-Sialic acid
PDB code: 2bat(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 7
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1inw(A), 1inx(A), 1nn2(A), 2bat(A),


 
2. Ligand: NAG-NAG × 11
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1inh(A), 1ivc(A), 1ivd(A), 1ivf(A), 1ivg(A), 1nn2(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 9
PDB codes: 1inh(A), 1inw(A), 1inx(A), 1ivc(A), 1ivd(A), 1ivf(A), 1ivg(A), 1nn2(A), 2bat(A).

 

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