spacer
spacer

PDBsum entry 2ban

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2ban calculated with MOLE 2.0 PDB id
2ban
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.60 46.7 -1.16 -0.50 18.7 86 4 2 3 4 0 1 0  
2 1.27 1.27 49.8 0.04 0.14 6.2 76 2 0 3 9 3 2 0  
3 2.28 2.29 61.8 -1.52 -0.40 18.9 82 7 2 4 3 2 0 0  
4 1.27 1.55 67.8 -0.44 -0.15 5.8 76 4 0 6 7 2 2 0  
5 1.22 1.22 78.6 -1.30 -0.41 19.1 81 6 6 3 8 2 1 0  
6 1.76 1.95 88.5 -1.14 -0.37 15.8 82 8 4 5 4 2 3 0  
7 1.52 1.71 90.9 -0.76 -0.25 12.0 83 6 3 6 6 2 3 0  
8 1.81 1.99 101.3 -0.93 -0.20 13.1 79 8 3 6 6 5 3 0  
9 1.28 1.40 110.9 -0.18 -0.10 8.5 77 6 2 7 13 4 3 0  
10 1.40 1.61 131.4 -1.71 -0.39 27.3 80 9 9 5 7 2 2 0  
11 1.70 3.24 138.5 -1.78 -0.43 20.7 75 8 8 4 3 4 3 0  
12 1.68 1.95 154.8 -1.13 -0.26 15.2 77 9 8 5 8 6 5 0  
13 2.27 2.50 158.7 -2.03 -0.47 27.6 77 13 9 4 5 4 3 0  
14 1.69 2.05 159.7 -1.59 -0.40 21.6 78 11 9 4 6 6 3 0  
15 2.29 2.99 166.6 -2.47 -0.52 32.4 77 16 14 2 4 2 3 0  
16 1.69 2.00 170.2 -0.72 -0.18 13.0 74 7 8 5 10 9 7 0  357 562 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer