spacer
spacer

PDBsum entry 2b7d

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2b7d calculated with MOLE 2.0 PDB id
2b7d
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.67 1.87 39.9 -0.49 -0.22 13.6 81 4 5 2 5 4 1 0  
2 1.68 1.90 54.0 -0.75 -0.23 15.5 77 7 6 3 6 5 1 0  
3 1.67 1.87 63.9 -1.31 -0.37 20.2 79 5 6 2 5 3 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer