PDBsum entry 2b39 Go to PDB code:  Pore analysis for: 2b39 calculated with MOLE 2.0 PDB id 2b39 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.39 25.9 -1.97 -0.66 26.2 85 4 4 2 1 0 1 0   2 1.27 1.47 27.2 -0.44 0.01 10.6 78 1 3 1 2 2 2 0   3 1.59 2.52 28.0 -1.31 -0.34 18.1 85 3 2 5 3 1 1 0   4 1.16 2.62 38.6 -1.21 -0.33 17.4 80 3 2 4 6 1 2 0   5 2.09 2.52 41.1 -1.13 -0.21 17.5 78 7 4 3 5 2 1 0   6 1.16 1.38 42.0 0.15 -0.14 10.1 84 3 3 4 10 1 2 0   7 1.42 1.66 42.1 -1.82 -0.31 27.0 78 7 4 1 3 1 0 0   8 1.23 1.54 45.7 -1.15 -0.17 15.1 78 5 4 3 4 3 1 0   9 1.15 1.37 45.9 -0.14 -0.15 11.8 82 4 3 4 9 2 2 0   10 1.27 1.55 118.5 -1.44 -0.20 24.8 76 15 9 7 10 4 2 2  NAG 1 D NAG 2 D BMA 3 D 11 2.19 2.56 169.8 -1.84 -0.41 26.6 80 24 15 10 11 7 3 0  NAG 1 D NAG 2 D BMA 3 D 12 1.43 1.72 170.7 -1.74 -0.35 24.3 75 18 11 6 9 7 6 3  NAG 1 D NAG 2 D BMA 3 D 13 1.26 1.84 196.3 -1.55 -0.25 20.7 79 19 18 15 11 9 5 0  NAG 1 C 14 1.22 1.47 198.3 -1.53 -0.44 26.2 79 22 19 10 14 2 4 2   15 1.33 1.56 253.9 -1.33 -0.45 21.4 79 18 22 12 16 4 10 3   16 1.27 2.14 268.8 -1.64 -0.28 20.6 78 23 22 15 17 10 8 3  NAG 1 C 17 1.27 1.92 273.0 -2.09 -0.33 26.8 77 36 26 13 17 12 9 4  NAG 1 D NAG 2 D BMA 3 D 18 1.27 1.94 301.2 -1.96 -0.36 26.5 76 34 29 11 17 8 12 3   19 1.30 1.49 349.9 -1.88 -0.40 23.6 79 37 32 20 16 17 12 1  NAG 1 D 20 1.28 1.28 36.9 -1.70 -0.12 30.4 84 4 3 2 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.