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PDBsum entry 2b0d

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2b0d calculated with MOLE 2.0 PDB id
2b0d
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.77 26.5 -1.74 -0.76 24.2 88 1 4 2 1 1 1 0  246 CA A,7 DT C
2 1.61 27.3 -2.43 -0.79 30.1 82 2 4 1 1 0 1 0  7 DT C,6 DA D,7 DT D
3 1.83 29.0 -1.85 -0.82 22.6 86 1 3 1 0 0 1 0  246 CA A,6 DA C,7 DT C,6 DA D,7 DT D
4 1.77 31.3 -1.70 -0.74 22.4 85 3 4 2 1 1 1 0  246 CA A,7 DT C,11 DT D
5 1.73 31.5 -1.65 -0.78 19.4 82 3 2 1 0 0 1 0  246 CA A,6 DA C,7 DT C,6 DA D,7 DT D
6 1.64 32.4 -2.25 -0.77 26.3 84 3 4 2 0 0 1 0  7 DT C,6 DA D,7 DT D
7 1.78 36.8 -2.06 -0.68 27.4 88 3 5 3 3 1 1 0  7 DT C,7 DT D
8 1.26 19.9 0.10 0.34 6.3 71 1 1 1 3 4 0 0  
9 1.92 9.2 -0.88 -0.12 23.3 81 1 2 0 2 1 1 0  
10 2.49 9.9 -1.31 -0.34 18.2 77 2 1 0 1 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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