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PDBsum entry 2b0d

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Top Page protein dna_rna metals Protein-protein interface(s) clefts links
Cleft analysis for: 2b0d PDB id
2b0d
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 8038.41 5.29 77.80 1 14.73 1 21.49 1 24 13 36 23 13 18 0  
2 1520.86 0.00 72.83 2 13.33 2 10.24 2 6 2 8 6 2 3 0  
3 845.44 0.00 61.70 7 9.78 4 9.88 3 2 0 5 1 0 0 0  
4 1229.34 0.00 66.09 3 6.40 10 9.03 5 5 2 5 7 9 1 0  
5 1059.75 0.00 64.89 4 7.26 6 9.15 4 5 1 4 9 8 1 0  
6 714.23 0.00 64.71 5 10.94 3 8.58 6 2 0 3 2 0 0 0  
7 743.77 0.00 60.89 8 9.09 5 7.70 9 4 4 3 4 2 1 0  
8 534.52 0.00 59.07 10 6.44 9 8.11 7 3 3 2 4 4 0 0  
9 428.20 0.00 59.10 9 7.19 7 7.86 8 4 2 3 0 1 0 0  
10 565.73 0.00 62.42 6 7.15 8 6.69 10 3 4 2 3 2 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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