PDBsum entry 2avt

Tunnel analysis for: 2avt calculated with

MOLE 2.0

PDB id

2avt

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.10

2.45

18.2

-0.74

-0.41

2.9

80

1

0

4

3

1

1

0

2

1.12

2.42

20.3

-0.37

-0.23

7.5

79

2

0

3

1

2

1

0

3

1.10

2.43

24.3

-0.19

-0.11

9.3

78

2

2

3

1

2

1

0

4

1.16

2.19

16.9

-0.59

-0.28

14.6

79

1

3

2

1

2

0

0

5

1.14

1.31

24.1

-0.43

0.27

2.7

79

1

0

5

4

3

0

0

6

1.26

2.91

33.8

1.92

0.70

6.8

77

1

1

2

11

4

0

0

7

1.24

2.70

36.6

2.14

0.82

8.3

74

2

2

1

10

4

0

0

8

1.72

1.79

15.0

-0.10

-0.12

18.3

65

1

2

0

3

2

1

0

9

1.13

1.37

20.4

0.17

0.46

6.2

79

1

0

3

3

3

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.