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PDBsum entry 2asj

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Pore analysis for: 2asj calculated with MOLE 2.0 PDB id
2asj
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.48 2.61 30.5 -0.52 0.17 24.8 90 6 0 1 3 1 0 0  DT 1803 H DG 1806 H DT 1808 H DG 1809 H DG 1810 H
DT 1811 H DC 1907 J DT 1908 J DA 1909 J DC 1910 J
DC 1911 J DA 1912 J DT 1913 J
2 1.86 1.88 41.7 -1.28 -0.29 15.1 86 4 3 1 7 1 1 0  DT 1811 H DA 1812 H DDG 1813 H DT 1908 J DA 1909 J
3 2.13 2.20 42.4 -1.69 -0.43 15.6 85 7 3 3 6 2 1 0  DT 1811 H DA 1812 H DDG 1813 H DA 1909 J DC 1910 J
4 2.33 2.52 29.8 0.36 0.08 13.3 98 4 0 3 4 0 0 0  DG 802 D DT 803 D DT 804 D DA 807 D DT 808 D DG
809 D DG 810 D DT 811 D DT 908 E DC 910 E DC 911
E DA 912 E DT 913 E
5 2.67 2.66 42.7 -1.36 -0.39 15.2 83 5 3 2 3 3 0 0  DT 811 D DA 812 D DDG 813 D DA 909 E DC 910 E DC
911 E DA 912 E DT 913 E
6 2.05 2.05 47.8 -1.34 -0.55 15.7 86 6 2 2 2 1 0 0  DG 809 D DG 810 D DT 811 D DA 812 D DDG 813 D DA
909 E DC 910 E DC 911 E DA 912 E DT 913 E DC 914
E DC 915 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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