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PDBsum entry 2as5

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2as5 calculated with MOLE 2.0 PDB id
2as5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.16 1.40 120.3 -1.24 -0.51 17.6 86 10 4 8 7 1 1 0  DA 4007 A DA 4008 A DA 4009 A DT 4010 A DT 4011 A
DT 5017 B DT 5018 B DC 5019 B DC 5020 B DT 5021 B
DT 5016 D
2 1.16 1.38 127.1 -0.71 -0.38 15.2 86 11 4 8 10 1 1 0  DA 4006 C DA 4007 C DA 4008 C DA 4009 C DT 4010 C
DT 4011 C DT 5016 D DT 5017 D DT 5018 D DC 5019 D
DC 5020 D DT 5021 D
3 1.27 1.37 15.3 1.31 0.22 1.5 93 0 0 1 6 0 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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