PDBsum entry 2amq

Tunnel analysis for: 2amq calculated with

MOLE 2.0

PDB id

2amq

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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10 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

1.69

29.9

-1.48

-0.62

16.8

83

4

2

1

1

1

0

0

2

1.64

1.64

30.3

-1.71

-0.64

21.5

88

4

3

3

2

1

0

0

3

1.70

1.70

31.5

-1.35

-0.46

20.0

87

5

4

2

2

1

0

0

4

1.29

1.58

26.5

-1.49

-0.34

14.8

77

2

2

3

1

3

0

0

5

1.98

2.03

16.0

-1.14

0.01

23.8

82

1

2

2

3

0

1

0

6

1.43

1.44

16.5

-1.35

-0.19

21.8

82

1

2

2

2

0

2

0

7

1.26

1.82

21.3

-0.83

-0.19

9.8

84

1

2

4

2

1

1

0

8

1.78

2.08

21.8

0.44

0.34

9.7

81

1

2

1

3

1

1

0

9

1.22

1.42

17.2

-0.12

0.25

22.2

78

2

1

0

3

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.