PDBsum entry 2agq Go to PDB code:  Tunnel analysis for: 2agq calculated with MOLE 2.0 PDB id 2agq Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.31 2.42 16.2 1.04 0.65 16.5 94 2 0 0 3 0 0 0  DA 10 B DC 11 B DT 4 C DG 5 C DA 6 C DG 7 C 2 2.29 2.38 27.2 -2.02 -0.24 31.1 94 4 0 2 2 0 0 0  DA 5 B DG 8 B DG 9 B DG 7 C DT 8 C DC 9 C DC 10 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.