PDBsum entry 2agj Go to PDB code:  Tunnel analysis for: 2agj calculated with MOLE 2.0 PDB id 2agj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.53 21.1 -0.55 -0.36 10.6 93 1 1 3 3 0 0 0   2 1.25 3.18 21.4 -0.88 -0.42 12.7 93 1 1 3 3 1 0 0   3 1.28 3.46 21.9 -0.53 -0.27 10.6 88 1 1 4 3 1 0 0   4 1.18 2.49 23.0 -0.61 -0.34 11.2 93 1 1 3 3 0 0 0   5 1.22 1.96 15.2 0.64 0.68 5.8 74 1 1 1 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.