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PDBsum entry 2afq
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Pore analysis for: 2afq calculated with  MOLE 2.0
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PDB id
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2afq
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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7 pores,
coloured by radius |
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9 pores,
coloured by radius
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9 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.83 |
3.68 |
42.1 |
-1.70 |
-0.11 |
26.1 |
77 |
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6 |
6 |
2 |
3 |
3 |
0 |
0 |
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GOL 1002 B GOL 1001 D
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2 |
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1.88 |
3.62 |
47.9 |
-1.57 |
-0.06 |
28.4 |
74 |
8 |
9 |
1 |
4 |
4 |
0 |
1 |
GOL 1002 B GOL 1001 D GOL 1007 D
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3 |
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1.26 |
2.25 |
54.4 |
-1.27 |
-0.38 |
13.5 |
80 |
3 |
6 |
2 |
3 |
2 |
1 |
0 |
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4 |
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1.95 |
3.08 |
56.0 |
-2.20 |
-0.66 |
26.9 |
78 |
6 |
9 |
1 |
1 |
2 |
1 |
0 |
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5 |
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1.27 |
2.27 |
60.4 |
-0.96 |
-0.24 |
14.6 |
75 |
5 |
7 |
1 |
5 |
4 |
1 |
0 |
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6 |
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1.30 |
2.27 |
64.7 |
-0.91 |
0.00 |
16.7 |
75 |
5 |
6 |
2 |
7 |
5 |
0 |
0 |
GOL 1002 B GOL 1001 D
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7 |
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1.25 |
2.27 |
67.3 |
-1.27 |
-0.42 |
13.9 |
80 |
4 |
5 |
2 |
4 |
2 |
0 |
0 |
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8 |
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1.30 |
2.30 |
69.0 |
-1.04 |
-0.02 |
18.3 |
76 |
8 |
7 |
2 |
7 |
4 |
0 |
1 |
GOL 1002 B GOL 1001 D GOL 1007 D
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9 |
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1.17 |
1.33 |
83.5 |
-1.63 |
-0.25 |
24.2 |
73 |
12 |
13 |
1 |
3 |
4 |
3 |
1 |
GOL 1002 B GOL 1001 D GOL 1007 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program