spacer
spacer

PDBsum entry 2adc

Go to PDB code: 
Top Page protein dna_rna tunnels links
Tunnel analysis for: 2adc calculated with MOLE 2.0 PDB id
2adc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.30 1.30 29.4 0.04 0.11 8.6 82 2 0 3 3 3 0 0  U 533 B C 534 B U 535 B
2 1.28 1.28 32.7 0.23 -0.04 3.5 80 1 0 4 3 3 0 0  C 534 B U 535 B
3 1.20 1.95 26.8 1.92 0.65 4.7 82 1 1 2 8 0 1 0  
4 1.10 1.11 37.7 1.03 0.15 3.0 80 1 0 2 9 0 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer