spacer
spacer

PDBsum entry 2a6e

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 2a6e calculated with MOLE 2.0 PDB id
2a6e
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
53 pores, coloured by radius 60 pores, coloured by radius 60 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.49 3.67 34.2 -1.87 -0.57 25.2 88 3 4 2 3 0 1 0  
2 1.29 2.39 38.3 1.77 0.51 3.7 69 2 2 1 12 2 1 0  
3 1.35 1.35 40.6 -0.14 -0.20 15.3 76 4 5 0 6 3 0 0  
4 1.76 2.99 46.3 -1.55 -0.23 21.1 77 7 6 0 6 2 5 0  
5 2.44 3.61 63.6 -1.51 -0.22 24.8 79 10 7 1 3 4 1 0  
6 2.45 3.60 72.1 -1.41 -0.13 25.2 78 12 8 1 6 6 1 0  
7 2.42 3.74 73.8 -2.01 -0.31 26.8 81 11 7 4 5 4 2 0  
8 1.33 1.33 82.0 0.38 0.32 11.3 78 6 3 1 18 5 1 0  
9 2.56 2.70 87.8 -2.02 -0.47 25.1 80 14 7 5 6 3 1 0  
10 2.65 2.65 99.4 -1.79 -0.50 25.4 82 14 10 6 6 2 1 0  
11 1.67 1.80 103.0 -1.57 -0.33 26.1 77 11 13 1 8 3 2 0  
12 1.67 2.95 102.2 -1.72 -0.43 24.1 81 11 12 2 7 2 8 0  
13 1.64 1.77 107.4 -1.61 -0.40 28.1 79 12 14 2 7 1 1 0  
14 2.65 2.65 108.0 -1.64 -0.42 25.7 80 17 11 6 9 4 1 0  
15 2.74 2.90 109.6 -1.98 -0.55 28.9 80 11 11 3 4 3 2 0  
16 1.94 2.42 122.9 -2.32 -0.54 29.7 79 20 14 3 8 6 3 0  
17 1.56 1.75 121.8 -1.21 -0.24 25.7 79 12 15 2 12 4 2 0  
18 1.35 1.49 125.3 -1.83 -0.47 25.3 84 16 11 10 11 2 2 0  
19 1.94 2.37 134.4 -2.13 -0.53 29.6 80 20 17 4 8 5 3 0  
20 1.23 1.26 134.1 -1.33 -0.31 22.5 82 10 11 2 17 2 3 0  
21 2.43 3.62 135.7 -1.48 -0.29 24.9 80 17 14 3 8 7 3 0  
22 1.66 2.93 140.1 -1.79 -0.44 24.3 79 15 12 4 9 5 7 0  
23 1.30 1.85 155.9 -1.23 -0.33 19.1 82 19 11 12 15 3 7 0  
24 1.67 2.97 161.1 -1.52 -0.40 24.3 85 18 14 7 12 5 2 0  
25 2.59 2.66 166.3 -2.07 -0.50 28.0 79 20 21 10 8 4 3 0  
26 1.29 1.83 169.7 -1.00 -0.23 19.4 81 14 15 8 18 3 8 0  
27 1.21 2.75 173.1 -1.30 -0.36 16.9 80 12 6 9 20 3 6 0  
28 2.64 2.62 171.5 -1.66 -0.46 25.9 81 22 17 8 11 5 3 0  
29 1.80 1.99 185.3 -1.33 -0.34 25.5 80 17 21 4 14 5 4 0  
30 1.09 1.13 207.3 -1.74 -0.43 22.9 83 20 14 11 16 4 2 0  
31 1.90 1.90 37.6 -0.78 -0.40 13.6 85 3 2 3 2 0 2 0  
32 1.52 1.52 39.9 -0.34 -0.24 13.1 72 4 1 0 2 0 3 0  
33 1.36 2.46 75.1 -0.93 -0.25 10.0 78 5 2 9 10 4 5 0  
34 1.80 3.61 77.5 -2.18 -0.46 30.6 80 9 8 1 5 1 1 0  
35 1.16 1.56 79.2 -0.72 -0.23 13.2 82 9 2 2 13 2 5 0  
36 1.35 2.22 123.4 -2.08 -0.55 26.0 84 11 11 7 5 2 2 0  
37 1.75 2.73 133.1 -1.94 -0.52 21.0 84 17 11 12 10 2 5 0  
38 1.64 1.73 137.0 -1.49 -0.46 22.5 81 11 14 7 8 0 2 2  
39 1.57 1.73 138.6 -1.86 -0.48 23.5 82 17 13 9 9 2 5 2  
40 1.60 1.68 150.0 -1.94 -0.46 27.7 81 16 22 4 9 5 2 0  
41 1.48 2.55 151.1 -2.02 -0.49 24.7 84 20 17 12 11 2 6 0  
42 1.67 1.73 159.2 -1.49 -0.38 23.9 77 14 15 6 10 5 3 2  
43 2.65 3.58 154.6 -2.28 -0.65 25.0 85 17 14 15 10 0 7 0  
44 1.68 1.62 159.8 -1.46 -0.35 21.8 80 16 13 7 13 4 2 0  
45 1.95 3.21 160.3 -1.35 -0.18 23.2 80 14 9 4 15 3 5 0  
46 1.85 2.94 161.1 -1.75 -0.27 24.4 83 16 11 4 9 4 4 0  
47 1.55 2.64 164.7 -1.83 -0.47 23.4 84 15 11 9 11 1 5 0  
48 1.36 2.57 169.1 -1.32 -0.31 21.0 79 16 12 5 10 4 2 2  
49 1.30 1.55 174.1 -1.79 -0.50 21.3 84 19 17 16 15 3 6 0  
50 1.43 2.68 181.6 -1.62 -0.35 23.1 81 19 16 8 12 4 3 0  
51 1.51 2.95 176.4 -2.08 -0.60 27.3 81 21 18 6 6 1 2 0  
52 1.67 2.73 188.1 -1.13 -0.06 24.2 81 15 7 4 19 3 4 0  
53 1.59 1.58 188.5 -1.80 -0.45 26.0 82 18 19 11 12 4 6 0  
54 1.48 2.69 188.9 -1.45 -0.15 24.9 84 17 9 4 14 4 3 0  
55 1.67 1.73 194.3 -1.87 -0.50 25.2 82 17 16 9 10 2 5 2  
56 1.56 1.57 228.0 -1.34 -0.24 22.5 81 26 16 10 22 5 11 0  
57 1.94 3.18 240.3 -1.62 -0.36 24.7 83 22 15 10 20 2 8 0  
58 1.80 2.92 241.1 -1.83 -0.44 25.0 85 24 17 10 14 3 7 0  
59 1.54 1.54 247.5 -1.19 -0.20 23.7 78 24 18 6 23 6 9 0  
60 1.53 1.53 255.1 -1.35 -0.22 23.8 80 24 18 8 22 4 9 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer