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PDBsum entry 2a5v

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2a5v calculated with MOLE 2.0 PDB id
2a5v
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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16 tunnels, coloured by tunnel radius 16 tunnels, coloured by tunnel radius 16 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.47 19.8 -2.57 -0.48 38.9 86 4 3 0 2 0 1 0  
2 1.39 21.6 -2.62 -0.50 38.8 86 4 3 0 2 0 1 0  
3 1.38 35.3 -2.36 -0.55 32.2 86 6 6 2 2 1 1 0  
4 1.29 20.4 -0.47 -0.14 15.1 83 1 3 2 3 1 1 0  
5 1.31 26.9 -0.29 -0.12 14.0 84 2 3 2 5 1 1 0  
6 1.38 19.8 -2.15 -0.68 28.0 79 3 4 1 0 0 0 2  
7 1.28 20.1 -0.17 0.07 15.7 83 1 3 3 3 1 1 0  
8 1.87 7.8 -0.76 -0.20 7.5 73 1 1 1 1 2 0 0  
9 1.49 9.2 -0.28 -0.34 4.0 89 0 1 1 4 0 0 0  
10 1.57 9.6 0.44 -0.17 2.5 90 0 1 1 5 0 0 0  
11 1.66 8.3 -0.69 -0.01 8.7 76 2 1 1 2 2 0 0  
12 2.07 8.9 -1.22 -0.55 12.0 83 1 0 3 1 0 1 0  
13 2.02 9.4 -1.01 -0.53 10.9 83 1 0 2 1 0 1 0  
14 2.13 6.5 -1.02 -0.70 7.9 100 1 0 2 1 0 0 0  
15 1.87 5.8 -1.21 -0.57 16.1 68 1 0 1 1 0 0 0  
16 1.45 8.9 0.24 -0.07 16.1 94 1 1 0 2 0 0 0  410 ZN D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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