PDBsum entry 2a1d Go to PDB code:  Pore analysis for: 2a1d calculated with MOLE 2.0 PDB id 2a1d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.34 2.87 25.5 -2.45 -0.73 32.0 84 3 4 2 1 1 0 0   2 1.50 1.69 27.5 -1.95 -0.29 25.2 76 6 4 1 2 3 0 0   3 2.49 2.58 27.5 -1.38 -0.14 22.7 84 2 3 1 1 2 0 0   4 2.34 2.88 38.0 -2.89 -0.65 37.9 78 6 5 2 1 2 0 0   5 1.77 1.77 45.3 -1.42 -0.41 22.0 78 5 3 0 3 2 1 0   6 2.34 2.87 49.7 -2.35 -0.76 30.7 82 5 5 2 1 1 1 0   7 2.14 4.29 50.7 -1.86 -0.41 25.9 82 6 4 3 3 1 0 0   8 2.80 3.17 55.4 -1.82 -0.15 29.1 75 8 4 0 3 4 0 0   9 1.70 1.70 59.6 -1.32 -0.30 23.0 75 7 6 1 4 4 0 0   10 2.33 2.87 62.2 -2.64 -0.69 34.7 77 8 6 2 1 2 1 0   11 2.96 4.47 75.8 -1.52 -0.15 20.8 81 4 5 1 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.