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Ligand clusters for UniProt code P98002

Ligand clusters for P98002: Cytochrome c oxidase subunit 1-beta OS=Paracoccus denitrificans GN=ctaDII PE=1 SV=1

Top 6 (of 12) ligand clusters
Cluster 1.
4 ligand types
9 ligands
Cluster 2.
2 ligand types
3 ligands
Cluster 3.
3 ligand types
8 ligands
Cluster 4.
2 ligand types
3 ligands
Cluster 5.
3 ligand types
5 ligands
Cluster 6.
2 ligand types
6 ligands
Representative protein: 1qleA  
 

Structures

PDB   Schematic diagram
1qleA    
3hb3A    
3ehbA    
1ar1A    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: LDA × 1
Lauryl dimethylamine-N-Oxide
PDB code: 1ar1(A).


 
2. Ligand: HEA × 4
Heme-A
PDB codes: 1ar1(A), 1qle(A), 3ehb(A), 3hb3(A).


 
3. Ligand: LMT × 3
Dodecyl-Beta-D-Maltoside
PDB codes: 3ehb(A), 3hb3(A),


 
4. Ligand: LDA × 1
Lauryl dimethylamine-N-Oxide
PDB code: 3ehb(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: PC1 × 1
1,2-Diacyl-Sn-Glycero-3-Phosphocholine
PDB code: 1qle(A).


 
2. Ligand: LDA × 2
Lauryl dimethylamine-N-Oxide
PDB codes: 3ehb(A), 3hb3(A).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: HEA × 4
Heme-A
PDB codes: 1ar1(A), 1qle(A), 3ehb(A), 3hb3(A).

_Cu
 
2. Metal: _CU × 3
PDB codes: 1ar1(A), 1qle(A), 3ehb(A).

Cu1
 
3. Metal: CU1 × 1
PDB code: 3hb3(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: LDA × 1
Lauryl dimethylamine-N-Oxide
PDB code: 1ar1(A).


 
2. Ligand: LMT × 2
Dodecyl-Beta-D-Maltoside
PDB codes: 3ehb(A), 3hb3(A).

 

 Cluster 5 contains 3 ligand types

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Ligand Description


 
1. Ligand: LDA × 1
Lauryl dimethylamine-N-Oxide
PDB code: 1ar1(A).


 
2. Ligand: LMT × 3
Dodecyl-Beta-D-Maltoside
PDB codes: 3ehb(A), 3hb3(A),


 
3. Ligand: LDA × 1
Lauryl dimethylamine-N-Oxide
PDB code: 3ehb(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: LDA × 4
Lauryl dimethylamine-N-Oxide
PDB codes: 1ar1(A), 3ehb(A), 3hb3(A),


 
2. Ligand: LMT × 2
Dodecyl-Beta-D-Maltoside
PDB codes: 3ehb(A), 3hb3(A).

 

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