PDBsum entry 1zqf Go to PDB code:  Tunnel analysis for: 1zqf calculated with MOLE 2.0 PDB id 1zqf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.69 1.73 16.8 -1.09 -0.42 14.9 94 3 0 2 1 0 0 0  DT 4 T DA 5 T DG 6 T 2 1.69 1.73 17.8 -1.09 -0.40 15.0 94 3 0 2 1 0 0 0  DT 4 T DA 5 T DG 6 T 3 1.90 2.22 22.5 -1.15 -0.45 13.2 95 3 0 3 1 0 0 0  DT 3 P DA 4 P DA 5 P DT 3 T DT 4 T DA 5 T DG 6 T DA 7 T DA 8 T 4 1.71 1.71 23.5 -1.14 -0.43 13.4 95 3 0 3 1 0 0 0  DT 3 P DA 4 P DA 5 P DT 3 T DT 4 T DA 5 T DG 6 T DA 7 T DA 8 T 5 1.90 2.20 27.7 -0.79 -0.41 11.0 95 2 0 2 1 0 0 0  DT 1 P DT 3 P DA 4 P DA 5 P DT 3 T DT 4 T DA 5 T DG 6 T DA 7 T DA 8 T 6 1.71 1.71 28.7 -0.82 -0.42 10.9 95 2 0 2 1 0 0 0  DT 1 P DT 3 P DA 4 P DA 5 P DT 3 T DT 4 T DA 5 T DG 6 T DA 7 T DA 8 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.