PDBsum entry 1zmf

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Isomerase PDB id
Protein chain
162 a.a.
Waters ×142

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Key reference
Title 1.88 a crystal structure of the c domain of hcyp33: a novel domain of peptidyl-Prolyl cis-Trans isomerase.
Authors T.Wang, C.H.Yun, S.Y.Gu, W.R.Chang, D.C.Liang.
Ref. Biochem Biophys Res Commun, 2005, 333, 845-849. [DOI no: 10.1016/j.bbrc.2005.06.006]
PubMed id 15963461
Cyclophilins (CyPs) are a widespreading protein family in living organisms and possess the activity of peptidyl-prolyl cis-trans isomerase (PPIase), which is inhibited by cyclosporin A (CsA). The human nuclear cyclophilin (hCyP33) is the first protein which was found to contain two RNA binding domains at the amino-terminus and a PPIase domain at the carboxyl-terminus. We isolated the hCyP33 gene from the human hematopoietic stem/progenitor cells and expressed it in Escherichia coli, and determined the crystal structure of the C domain of hCyP33 at 1.88 A resolution. The core structure is a beta-barrel covered by two alpha-helices. Superposition of the structure of the C domain of hCyP33 with the structure of CypA suggests that the C domain contains PPIase active site which binds to CsA. Furthermore, C domain seems to be able to bind with the Gag-encoded capsid (CA) of HIV-1 and may affect the viral replication of HIV-1. A key residue of the active site is changed from Ala-103-CypA to Ser-239-hCyP33, which may affect the PPIase domain/substrates interactions.
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