PDBsum entry 1zd7 Go to PDB code:  Tunnel analysis for: 1zd7 calculated with MOLE 2.0 PDB id 1zd7 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 2.05 21.3 2.64 0.88 0.8 73 0 0 0 8 1 0 0   2 1.30 2.16 22.1 2.53 0.81 0.9 75 0 0 0 9 1 0 0   3 1.30 2.14 23.0 1.97 0.64 3.6 72 1 0 0 8 1 1 0   4 1.33 2.36 24.8 2.40 0.69 1.0 75 0 0 0 11 1 0 0   5 1.33 2.35 25.8 1.93 0.54 3.2 73 1 0 0 10 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.