PDBsum entry 1zbj Go to PDB code:  Tunnel analysis for: 1zbj calculated with MOLE 2.0 PDB id 1zbj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.50 17.4 0.82 0.53 1.8 63 0 0 0 4 4 0 0   2 1.28 1.48 18.6 0.83 0.47 1.8 66 0 0 0 3 3 1 0   3 1.31 1.47 18.7 0.83 0.47 1.8 63 0 0 0 4 4 0 0   4 1.30 1.46 19.9 1.04 0.52 1.7 66 0 0 0 3 3 1 0   5 1.12 3.62 25.5 0.69 0.46 1.5 75 0 0 2 2 4 0 0   6 1.32 1.49 31.5 1.22 0.52 1.5 73 0 0 2 4 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.