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Ligand clusters for UniProt code P04850

Ligand clusters for P04850: Hemagglutinin-neuraminidase OS=Simian virus 5 (strain W3) GN=HN PE=1 SV=1

6 ligand clusters
Cluster 1.
3 ligand types
6 ligands
Cluster 2.
2 ligand types
7 ligands
Cluster 3.
2 ligand types
7 ligands
Cluster 4.
2 ligand types
7 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
7 ligands
Representative protein: 4jf7D  
 

Structures

PDB   Schematic diagram
4jf7D    
1z4wA    
1z4vA    
1z4xA    
1z4yA    
 more ...

 

 Cluster 1 contains 3 ligand types

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Ligand Description


 
1. Ligand: DAN × 4
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB codes: 1z4v(A), 1z4w(A), 1z4z(A), 1z50(A).


 
2. Ligand: SLT × 1
5-(Acetylamino)-3,5-Dideoxynon-2-Ulopyranonosyl-(2->3)- Beta-D-Lyxo-Hexopyranosyl-(1-
>4)hexopyranose
PDB code: 1z4x(A).


 
3. Ligand: SO4 × 1
Sulfate ion
PDB code: 4jf7(D).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG × 6
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1z4v(A), 1z4w(A), 1z4x(A), 1z4y(A), 1z4z(A), 1z50(A).


 
2. Ligand: NAG-MAN-NAG × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 4jf7(D).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG × 6
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1z4v(A), 1z4w(A), 1z4x(A), 1z4y(A), 1z4z(A), 1z50(A).


 
2. Ligand: NAG-NAG-MAN × 1
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB code: 4jf7(D).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: NAG × 1
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB code: 4jf7(D).


 
2. Ligand: NDG × 6
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB codes: 1z4v(A), 1z4w(A), 1z4x(A), 1z4y(A), 1z4z(A), 1z50(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG × 1
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB code: 4jf7(D).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Ca
 
1. Metal: _CA × 7
PDB codes: 1z4v(A), 1z4w(A), 1z4x(A), 1z4y(A), 1z4z(A), 1z50(A), 4jf7(D).

 

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