PDBsum entry 1yyl Go to PDB code:  Pore analysis for: 1yyl calculated with MOLE 2.0 PDB id 1yyl Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 1.89 46.1 -1.28 -0.30 20.6 81 4 5 5 4 1 4 3  NAG 1886 P MPT 1001 S 2 1.36 1.45 88.2 -0.75 -0.15 18.4 81 8 5 8 8 1 5 4  NAG 1886 P MPT 1001 S VLM 1027 S 3 1.52 3.98 126.9 -1.85 -0.48 23.6 82 11 11 10 8 4 1 2  NAG 1734 P NAG 1741 P NAG 1776 P VLM 1027 S 4 1.78 1.78 35.2 -1.00 -0.45 18.9 86 3 3 2 4 0 0 0  VLM 27 M 5 1.35 1.49 58.7 -0.31 0.01 17.5 73 6 3 2 3 1 1 3  MPT 1 M 6 1.12 1.12 63.7 -0.07 -0.27 7.2 85 3 4 8 8 4 6 2  NAG 1762 P 7 1.11 1.46 75.8 -0.47 -0.25 9.3 85 5 4 11 10 4 6 3  NAG 1762 P Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.