PDBsum entry 1yui Go to PDB code:  Tunnel analysis for: 1yui calculated with MOLE 2.0 PDB id 1yui Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.27 17.2 -1.77 -0.79 13.7 96 2 0 3 0 0 0 0  DA 105 B DG 106 B DA 107 B DA 114 C DC 115 C DT 116 C 2 1.81 1.81 16.0 -2.24 -0.60 24.7 88 2 0 2 1 0 0 0  DA 105 B DG 106 B DT 116 C DC 117 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.