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PDBsum entry 1ytz

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Top Page protein ligands metals Protein-protein interface(s) links
Contractile protein PDB id
1ytz
Contents
Protein chains
90 a.a.
141 a.a.
159 a.a.
Ligands
DR6 ×3
Metals
_CA ×4
Waters ×33

References listed in PDB file
Key reference
Title Ca(2+)-Regulated structural changes in troponin.
Authors M.V.Vinogradova, D.B.Stone, G.G.Malanina, C.Karatzaferi, R.Cooke, R.A.Mendelson, R.J.Fletterick.
Ref. Proc Natl Acad Sci U S A, 2005, 102, 5038-5043. [DOI no: 10.1073/pnas.0408882102]
PubMed id 15784741
Abstract
Troponin senses Ca2+ to regulate contraction in striated muscle. Structures of skeletal muscle troponin composed of TnC (the sensor), TnI (the regulator), and TnT (the link to the muscle thin filament) have been determined. The structure of troponin in the Ca(2+)-activated state features a nearly twofold symmetrical assembly of TnI and TnT subunits penetrated asymmetrically by the dumbbell-shaped TnC subunit. Ca ions are thought to regulate contraction by controlling the presentation to and withdrawal of the TnI inhibitory segment from the thin filament. Here, we show that the rigid central helix of the sensor binds the inhibitory segment of TnI in the Ca(2+)-activated state. Comparison of crystal structures of troponin in the Ca(2+)-activated state at 3.0 angstroms resolution and in the Ca(2+)-free state at 7.0 angstroms resolution shows that the long framework helices of TnI and TnT, presumed to be a Ca(2+)-independent structural domain of troponin are unchanged. Loss of Ca ions causes the rigid central helix of the sensor to collapse and to release the inhibitory segment of TnI. The inhibitory segment of TnI changes conformation from an extended loop in the presence of Ca2+ to a short alpha-helix in its absence. We also show that Anapoe, a detergent molecule, increases the contractile force of muscle fibers and binds specifically, together with the TnI switch helix, in a hydrophobic pocket of TnC upon activation by Ca ions.
Figure 3.
Fig. 3. Superposition of the structures of chicken skeletal muscle troponin and human cardiac troponin in the Ca^2+-saturated state. The structure of cardiac troponin (28) (PDB ID code 1J1D [PDB] ; chains A, B, and C) is shown in gray. Arrows indicate deviations.
Figure 5.
Fig. 5. Cartoon representation of the conformational changes occurring in troponin during muscle contraction. For color coding, see the legend to Fig. 1. Ca ions are shown as black circles. The hydrophobic pocket opened in the N-terminal lobe of TnC is colored in green. The switch segment and the inhibitory segment of TnI are indicated.
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