PDBsum entry 1yol Go to PDB code:  Tunnel analysis for: 1yol calculated with MOLE 2.0 PDB id 1yol Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 2.28 23.3 -0.55 -0.16 20.4 89 1 3 0 7 0 0 0  S03 602 B 2 1.28 2.20 24.9 -0.97 -0.21 23.6 90 2 3 1 7 0 0 0  S03 602 B 3 1.27 2.18 25.6 0.26 0.13 14.7 85 1 2 0 9 1 0 0  S03 602 B 4 1.34 2.80 16.3 -0.48 -0.34 2.1 75 0 0 0 1 1 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.