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PDBsum entry 1yo1

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Tunnel analysis for: 1yo1 calculated with MOLE 2.0 PDB id
1yo1
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.69 5.4 -1.29 -0.44 5.7 73 1 0 0 0 0 2 0  
2 2.90 6.3 -1.81 -0.30 15.6 69 1 0 0 1 0 3 0  
3 2.11 9.5 -1.50 -0.48 22.7 81 2 2 1 1 0 1 0  
4 1.59 10.7 0.89 -0.04 1.9 91 0 0 1 4 0 0 0  
5 1.56 12.8 0.51 0.09 14.8 88 1 2 0 4 0 0 0  
6 1.39 9.8 -1.52 -0.06 15.6 76 2 0 1 1 1 0 0  
7 1.39 10.7 -1.58 0.02 14.3 69 1 0 1 0 1 1 0  
8 1.49 4.6 -0.19 -0.06 12.5 58 1 0 0 0 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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