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PDBsum entry 1yo0

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Cleft analysis for: 1yo0 PDB id
1yo0
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 3250.97 3.50 63.61 5 11.31 2 15.20 1 10 7 6 11 7 10 0  
2 929.81 0.00 62.63 6 8.23 5 6.35 8 5 3 6 3 2 4 0  
3 769.08 0.00 65.21 2 8.73 4 8.59 4 6 3 6 6 1 2 0  
4 491.91 0.00 76.02 1 10.64 3 7.26 6 5 2 2 2 1 4 0  
5 429.47 0.00 60.07 8 5.82 6 9.34 2 4 0 1 2 3 0 0  
6 515.11 0.00 50.90 10 5.41 8 9.07 3 3 2 2 3 0 4 0  
7 383.91 0.00 64.25 4 11.88 1 7.61 5 1 2 4 1 2 0 0  
8 332.44 0.00 64.52 3 5.71 7 0.00 10 1 2 2 3 2 2 0  
9 297.00 0.00 58.65 9 2.54 10 6.45 7 2 4 4 0 0 1 0  
10 271.27 0.00 60.74 7 4.17 9 5.15 9 1 1 0 3 1 1 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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