 |
PDBsum entry 1ynw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1ynw calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1ynw
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.54 |
1.54 |
15.3 |
-2.92 |
-0.55 |
34.5 |
75 |
|
3 |
0 |
0 |
0 |
0 |
0 |
0 |
|
DT 415 C DC 416 C DT 419 D DT 420 D DG 422 D DA
423 D
|
 |
|
2 |
 |
1.55 |
1.55 |
16.0 |
-3.00 |
-0.54 |
35.7 |
77 |
4 |
0 |
0 |
0 |
0 |
0 |
0 |
DG 414 C DT 415 C DG 422 D DA 423 D
|
|
3 |
 |
1.16 |
1.17 |
23.8 |
-2.96 |
-0.22 |
34.7 |
73 |
5 |
0 |
0 |
0 |
1 |
0 |
0 |
DA 412 C DG 413 C DG 414 C DT 415 C DC 416 C DT
419 D DT 420 D DG 422 D DA 423 D
|
 |
4 |
 |
1.19 |
1.19 |
24.5 |
-2.86 |
-0.25 |
33.5 |
74 |
6 |
0 |
0 |
0 |
1 |
0 |
0 |
DA 412 C DG 413 C DG 414 C DT 415 C DA 423 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program