PDBsum entry 1ynl Go to PDB code:  Tunnel analysis for: 1ynl calculated with MOLE 2.0 PDB id 1ynl Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.40 16.1 -0.55 -0.41 7.2 80 0 2 4 2 1 1 0   2 1.18 1.41 17.6 0.23 -0.27 2.2 76 0 0 4 3 1 0 1   3 1.13 1.25 24.8 -0.61 -0.44 7.6 78 1 1 4 2 1 2 0   4 1.39 1.53 21.9 -0.93 0.19 9.2 73 3 0 2 1 5 0 0  NES 501 L 5 1.45 2.87 20.2 -0.13 -0.43 5.5 84 1 0 4 4 1 0 0   6 1.42 2.84 20.5 -0.21 -0.48 4.2 89 1 0 5 3 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.