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PDBsum entry 1yml

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Tunnel analysis for: 1yml calculated with MOLE 2.0 PDB id
1yml
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 11 tunnels, coloured by tunnel radius 11 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.45 10.6 -1.16 -0.68 12.6 88 1 1 1 2 0 1 0  473 CSO A
2 1.45 11.9 -1.13 -0.75 12.4 92 2 1 1 1 0 0 0  473 CSO A
3 1.70 12.5 -0.48 -0.07 7.4 78 3 0 1 1 1 1 0  
4 1.40 17.0 -0.52 -0.15 8.4 80 4 0 1 1 1 1 0  473 CSO A
5 1.29 22.0 -1.58 -0.52 16.7 77 3 0 1 2 2 1 0  473 CSO A
6 1.27 23.3 -1.53 -0.58 16.5 78 4 0 1 1 2 0 0  473 CSO A
7 1.28 30.4 -1.69 -0.54 17.8 87 4 1 2 2 1 1 0  473 CSO A
8 1.28 31.6 -1.82 -0.59 19.6 89 5 1 2 1 1 0 0  473 CSO A
9 1.29 37.0 -1.79 -0.56 19.9 82 5 2 1 2 2 1 0  473 CSO A,1001 CL A
10 1.27 38.2 -1.84 -0.59 20.6 82 6 2 1 1 2 0 0  473 CSO A,1001 CL A
11 1.55 10.1 0.44 -0.01 10.7 70 2 1 0 2 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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