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PDBsum entry 1ym3

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Tunnel analysis for: 1ym3 calculated with MOLE 2.0 PDB id
1ym3
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.66 7.2 2.56 0.42 0.9 98 0 0 0 7 0 0 0  
2 1.85 10.7 -1.06 -0.11 12.7 73 2 1 1 1 2 0 0  
3 1.49 8.7 -1.23 -0.52 13.6 91 1 0 2 2 0 0 0  
4 1.56 3.6 -1.18 -0.41 16.5 84 0 2 2 1 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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