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PDBsum entry 1ylk

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1ylk calculated with MOLE 2.0 PDB id
1ylk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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18 tunnels, coloured by tunnel radius 18 tunnels, coloured by tunnel radius 18 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.04 5.7 -3.54 -0.64 37.5 84 2 1 1 0 0 0 0  
2 1.42 15.1 1.06 0.36 11.2 81 1 1 0 6 0 0 1  503 SCN C
3 2.52 6.7 -1.43 -0.35 15.2 83 1 3 1 0 1 0 0  
4 2.47 8.1 -1.79 -0.21 20.9 77 1 2 0 0 2 0 0  
5 1.58 14.7 1.69 0.45 4.1 79 1 1 0 6 0 0 2  504 SCN C
6 1.28 18.0 1.39 0.43 7.8 80 1 1 0 7 0 0 2  504 SCN C
7 1.28 18.5 1.02 0.29 10.0 81 1 1 0 6 0 0 1  501 SCN B
8 1.37 18.3 1.00 0.27 10.6 83 1 1 0 7 0 0 1  502 SCN A
9 1.91 7.7 -3.31 -0.69 32.9 84 2 1 1 0 0 0 0  
10 1.26 11.5 0.43 0.17 6.7 61 1 0 0 2 1 0 3  
11 1.83 6.5 -1.41 -0.17 23.9 79 1 2 1 1 1 0 0  
12 1.65 9.2 -1.46 -0.40 20.6 86 1 2 3 2 1 0 0  
13 1.59 7.5 -2.77 -0.67 28.5 84 2 1 1 0 0 0 0  
14 1.56 6.5 -2.78 -0.65 29.0 84 2 1 1 0 0 0 0  
15 1.51 11.2 -2.16 -0.71 22.4 88 2 1 1 0 0 0 0  
16 1.56 9.0 -2.59 -0.71 24.9 84 2 1 1 0 0 0 0  
17 1.35 6.6 -0.79 0.08 22.9 77 2 0 0 1 1 0 0  
18 1.34 9.4 -0.99 -0.57 15.2 88 1 1 0 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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