PDBsum entry 1yla Go to PDB code:  Tunnel analysis for: 1yla calculated with MOLE 2.0 PDB id 1yla Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.47 18.1 -2.38 -0.69 30.3 86 4 2 2 2 0 0 0   2 1.49 1.56 20.5 -1.45 -0.47 16.6 86 3 1 2 3 0 0 0   3 1.18 1.34 22.2 -1.75 -0.47 24.8 82 5 1 1 3 1 0 0   4 1.31 1.48 29.0 -2.42 -0.82 24.4 87 3 2 4 1 0 0 0   5 1.49 1.56 30.9 -0.97 -0.22 22.5 80 6 1 0 3 0 0 1   6 1.32 1.48 34.4 -1.97 -0.71 22.8 92 4 3 4 2 0 0 0   7 1.49 1.56 35.6 -0.25 0.01 18.3 75 6 2 0 4 2 0 1   8 1.99 4.87 15.3 -1.79 -0.43 26.8 75 4 1 0 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.