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PDBsum entry 1ykc

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Top Page protein ligands Protein-protein interface(s) clefts links
Cleft analysis for: 1ykc PDB id
1ykc
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 7387.88 7.57 68.74 2 13.13 1 15.46 1 12 10 20 29 16 10 0 GDS 400[A], GDS 401[B] (80 atoms)
2 975.80 0.00 70.12 1 9.00 4 8.38 4 6 8 4 1 2 2 2  
3 950.91 0.00 57.08 9 5.78 10 10.84 3 2 1 4 6 4 3 0  
4 756.84 0.00 63.91 3 7.31 7 7.01 6 5 4 3 4 1 2 0  
5 831.09 0.00 55.76 10 5.93 9 11.67 2 2 1 2 5 2 3 0  
6 675.42 0.00 63.05 4 6.39 8 6.85 8 5 3 3 3 1 2 0  
7 757.27 0.00 60.13 7 7.46 6 6.95 7 3 4 4 3 3 0 0  
8 748.83 0.00 62.18 5 8.92 5 6.64 9 3 4 4 3 3 1 0  
9 508.36 0.00 59.58 8 9.31 2 7.61 5 1 2 1 2 3 2 0  
10 479.25 0.00 61.49 6 9.23 3 6.57 10 2 2 1 3 2 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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