PDBsum entry 1yj1 Go to PDB code:  Tunnel analysis for: 1yj1 calculated with MOLE 2.0 PDB id 1yj1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.52 15.4 -0.54 -0.30 10.4 79 0 2 3 3 0 2 0  CD 204 B 2 1.38 1.55 21.5 -0.26 -0.37 9.7 81 0 2 3 3 0 1 0   3 1.39 1.55 22.3 -0.12 -0.15 9.5 78 1 3 3 4 0 2 0   4 1.38 1.53 25.7 -0.19 -0.26 11.7 77 1 4 2 4 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.