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PDBsum entry 1ydd

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Tunnel analysis for: 1ydd calculated with MOLE 2.0 PDB id
1ydd
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.78 10.0 -0.71 -0.19 12.0 74 1 1 1 0 2 0 0  
2 1.42 10.5 0.11 0.08 8.9 73 1 1 0 1 2 0 0  
3 1.75 14.6 -0.93 -0.29 15.2 76 3 1 1 0 2 0 0  
4 1.93 8.2 -0.43 0.20 18.1 82 1 0 1 2 1 0 0  264 AZM A
5 1.95 11.9 0.69 0.49 14.3 73 1 0 1 4 2 0 0  264 AZM A
6 1.52 8.4 1.13 0.17 7.4 92 0 1 0 4 0 0 0  
7 1.47 10.3 0.41 -0.18 2.0 99 0 0 2 3 0 0 0  
8 1.60 8.6 -2.28 -0.61 15.5 74 2 0 2 0 0 1 0  
9 1.58 9.3 -2.05 -0.67 13.8 75 3 0 2 0 0 1 0  
10 1.59 10.0 -1.11 0.42 22.6 55 1 1 0 0 4 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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