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PDBsum entry 1ydc

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Cleft analysis for: 1ydc PDB id
1ydc
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1744.45 1.83 60.86 8 11.42 2 12.09 1 4 4 5 3 4 8 0  
2 952.17 0.00 71.12 3 9.59 3 7.05 6 5 3 5 8 5 2 0  
3 1145.81 0.00 62.22 7 9.09 4 6.89 8 6 3 6 3 2 7 0  
4 806.20 0.00 54.54 10 5.49 9 8.07 3 3 2 2 4 0 4 0  
5 733.64 0.00 63.89 5 6.91 7 7.61 4 5 4 4 5 1 2 0  
6 433.27 0.00 73.46 2 7.55 6 6.97 7 5 2 2 2 1 4 0  
7 369.14 0.00 64.87 4 7.96 5 8.55 2 1 2 5 1 2 0 0  
8 367.88 0.00 56.24 9 5.18 10 7.57 5 2 0 1 3 3 0 0  
9 307.12 0.00 62.86 6 5.51 8 5.94 9 1 3 2 3 2 2 0  
10 274.22 0.00 76.79 1 12.05 1 0.00 10 3 2 0 3 0 0 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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