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PDBsum entry 1ydb

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Cleft analysis for: 1ydb PDB id
1ydb
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 1415.39 1.21 60.60 8 11.07 1 10.45 1 4 4 4 2 4 7 0  
2 1167.75 0.00 54.24 10 4.48 9 7.75 4 6 2 3 6 5 4 0  
3 928.55 0.00 72.11 1 9.01 3 8.24 2 4 3 5 8 5 2 0 AZM 264[A] (12 atoms)
4 949.22 0.00 61.65 7 6.56 6 7.15 7 4 3 6 2 2 5 0  
5 696.09 0.00 64.76 4 8.02 4 6.49 8 5 4 4 3 1 2 0  
6 451.83 0.00 70.72 2 10.21 2 7.60 6 4 1 2 2 1 4 0  
7 352.69 0.00 64.18 5 6.85 5 7.63 5 1 2 5 1 2 0 0  
8 337.50 0.00 63.01 6 6.51 7 5.85 9 1 3 2 3 2 2 0  
9 290.67 0.00 57.08 9 4.19 10 5.68 10 2 1 0 3 1 2 0  
10 605.39 0.00 67.41 3 6.09 8 8.12 3 6 3 2 3 1 3 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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